{"id":451,"date":"2021-06-18T22:20:59","date_gmt":"2021-06-18T20:20:59","guid":{"rendered":"https:\/\/benediktehinger.de\/blog\/science\/?p=451"},"modified":"2021-06-18T22:21:01","modified_gmt":"2021-06-18T20:21:01","slug":"visualization-of-deconvolution-with-pluto-jl","status":"publish","type":"post","link":"https:\/\/benediktehinger.de\/blog\/science\/visualization-of-deconvolution-with-pluto-jl\/","title":{"rendered":"Visualization of deconvolution with pluto.jl"},"content":{"rendered":"\n

I just started dabbling with Pluto.jl and very quickly it allows to give very insightful notebooks.<\/p>\n\n\n\n

For example, take this signal:<\/p>\n\n\n\n

\"\"<\/a>
X in samples, y in “\u00b5V”, blue = 1 EEG channel, orange= event onsets<\/figcaption><\/figure>\n\n\n\n

Clearly, the simulated event-responses (the event-related potentials) overlap in time (e.g. at ~sample 350). We could do a “naive” regression on all timepoints relative to the event-onset, ignoring any overlap – or we could use linear deconvolution aka. overlap-correction to correct for the overlap (as the name says ;).<\/p>\n\n\n\n

What follows is the beauty of Pluto.jl – simple reactive\/interactive notebooks. As shown in the following gif, it is very easy to show the dependency of deconvolution-success on window-size and noise:<\/p>\n\n\n\n

\"\"\/
Mass Univariate analysis on the left, deconvolution on the right<\/figcaption><\/figure>\n\n\n\n

Looks pretty robust for this simulation! Cool!<\/p>\n\n\n\n

If you want to try for yourself: here is the notebook <\/a> and here <\/a>the link to the Unfold.jl toolbox<\/p>\n","protected":false},"excerpt":{"rendered":"

I just started dabbling with Pluto.jl and very quickly it allows to give very insightful notebooks. For example, take this signal: Clearly, the simulated event-responses (the event-related potentials) overlap in time (e.g. at ~sample 350). We could do a “naive” regression on all timepoints relative to the event-onset, ignoring any overlap – or we could use linear deconvolution aka. overlap-correction to correct for the overlap (as the name says ;). What follows is the beauty of Pluto.jl – simple reactive\/interactive notebooks. As shown in the following gif, it is very easy to show the dependency of deconvolution-success on window-size and…<\/p>\n","protected":false},"author":2,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[5],"tags":[],"class_list":["post-451","post","type-post","status-publish","format-standard","hentry","category-blog"],"_links":{"self":[{"href":"https:\/\/benediktehinger.de\/blog\/science\/wp-json\/wp\/v2\/posts\/451","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/benediktehinger.de\/blog\/science\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/benediktehinger.de\/blog\/science\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/benediktehinger.de\/blog\/science\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/benediktehinger.de\/blog\/science\/wp-json\/wp\/v2\/comments?post=451"}],"version-history":[{"count":0,"href":"https:\/\/benediktehinger.de\/blog\/science\/wp-json\/wp\/v2\/posts\/451\/revisions"}],"wp:attachment":[{"href":"https:\/\/benediktehinger.de\/blog\/science\/wp-json\/wp\/v2\/media?parent=451"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/benediktehinger.de\/blog\/science\/wp-json\/wp\/v2\/categories?post=451"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/benediktehinger.de\/blog\/science\/wp-json\/wp\/v2\/tags?post=451"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}